FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23162605
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2233124796.4107750401995No Hit
NGTCCAGA3445881.4876910433865276No Hit
GGTCCAGC440410.19013837174186582No Hit
GGGCCAGA391540.16903970861653947No Hit
GGTCCCGA391520.16903107400916262No Hit
GGCCCAGA348720.1505530142227094No Hit
GGTCGAGA260190.11233192466909488No Hit
GGTCCAGG238980.1031749235459483No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)