FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21676412
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2067040595.35897822942285No Hit
NGTCGGAT4503212.0774702012491737No Hit
TGTCGGCT569460.26270952960296196No Hit
TGTCGGGT548280.25293853982845504No Hit
TGGCGGAT417290.1925087971201138No Hit
TGCCGGAT393790.18166751951383836No Hit
TNTCGGAT345650.15945904700464267No Hit
TGTCGGTT319130.14722454989322034No Hit
TGTCGGAG266140.12277862221847416No Hit
TGTCGGAA254320.1173256902479986No Hit
TGTTGGAT251360.11596015060056988No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)