FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18803219
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1804953495.99172354478242No Hit
NGGATCTA3376781.79585208256097No Hit
AGGCTCTA390910.20789525453062055No Hit
AGGTTCTA323240.17190673575625534No Hit
CGGATCTA307310.1634347820976823No Hit
AGGGTCTA307190.16337096323773073No Hit
AGGAGCTA295280.15703694138753582No Hit
AGGATCTC289350.15388322605826163No Hit
AGGATGTA276830.14722479166997948No Hit
ANGATCTA210810.11211378221994861No Hit
AGGATCTT195940.10420556182428124No Hit
AGGATCAA191360.10176980866946239No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)