FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22609886
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2163988995.70985453000515No Hit
NTGAGCCT4590602.0303507943383705No Hit
TTGCGCCT457050.2021460877777093No Hit
TTGGGCCT379910.16802826869626852No Hit
TTTAGCCT342150.15132760952443544No Hit
ATGAGCCT304210.13454733915951633No Hit
GTGAGCCT284620.12588298764531586No Hit
TTGTGCCT275480.12184050817416771No Hit
TTCAGCCT271230.11996079944852442No Hit
TTGAGCCC268450.11873124879975071No Hit
CTGAGCCT248810.11004478306524855No Hit
TTAAGCCT235790.10428624009868957No Hit
TNGAGCCT227550.10064181659297176No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)