FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18067097
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1742723796.45842384086386No Hit
NATGCTTA3111951.7224405226805393No Hit
CATGCTAA409290.22653888447048245No Hit
CCTGCTTA245490.13587683732477887No Hit
CATGCTTC227440.12588630038350931No Hit
CGTGCTTA186510.10323185844410974No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)