FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16764463
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG10800.083.901399
CGGTACG25650.079.413731
TGCGCGA25450.078.015191
CGCCGAA27450.077.4209751
TTTGCGC29500.076.777131
GCGCTAG29300.076.046321
GTGCGAC26800.073.810931
CCGCTAT33600.073.317681
ACGACCG22650.071.4262161
GCGCGTA28400.069.91151
GACGCGT24700.069.0707551
TAGGCGC31500.064.898911
GGCGACT32450.064.3586351
TTACCCG33150.064.3306051
CGAACTA37100.064.220591
GCCGGAT35250.063.2101331
CGAACGC30650.062.6200141
TTCCGCG14700.062.1353457
GTACCGT40600.061.9564258
AACCGCG29800.061.4449581
Produced by FastQC (version 0.11.5)