FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20884488
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1994592495.50592765309833No Hit
NATAGCGA4321972.0694641879657283No Hit
CATAGCGC481180.23040066866853523No Hit
CATAGCGT366630.17555134700932098No Hit
CATAGCGG336260.1610094535235913No Hit
CNTAGCGA309340.14811950381546343No Hit
CATAGCAA288420.13810249980751266No Hit
CATCGCGA277090.13267742067701158No Hit
CATGGCGA257360.12323021756626257No Hit
CATTGCGA210190.10064407612003702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers