FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20813272
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1993561895.78320025798924No Hit
NATAGCGA4395152.1117054540967897No Hit
CATAGCGC461370.22167105681413285No Hit
CATAGCAA339430.16308344022025947No Hit
CATAGCGT322940.15516061097937894No Hit
CATAGCGG263360.126534645777944No Hit
CATCGCGA234590.11271173508903358No Hit
CAGAGCGA221910.10661946857754995No Hit
CCTAGCGA214990.10329466697980019No Hit
CNTAGCGA211180.1014641042504033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)