FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19269471
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1843038595.64551616388431No Hit
NGCAATTC4075712.1151125529081725No Hit
AGCACTTC424590.22034336074923905No Hit
AGCAATTA374400.19429697888437103No Hit
AGCAATGC325170.16874879440125784No Hit
AGCAATCC273410.14188765223497835No Hit
AGCAGTTC257760.13376599700116312No Hit
AGCATTTC230360.11954661339691162No Hit
CGCAATTC226880.11774064788805048No Hit
AGCAATTT225120.11682728602150003No Hit
ANCAATTC197790.10264422930966813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)