FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18567586
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1778690195.7954415829823No Hit
NGGATCTA2901581.5627125680204201No Hit
AGGAGCTA395160.21282249615001111No Hit
AGGCTCTA370020.19928277159992688No Hit
AGGATGTA349270.18810738240286057No Hit
AGGTTCTA341870.18412194240005136No Hit
CGGATCTA334840.1803357743973826No Hit
AGGGTCTA327160.1761995339620347No Hit
AGGATCTC320690.1727149668244434No Hit
AGGATCAA226310.12188444959942558No Hit
AGGATCTT211850.11409668440474707No Hit
GGGATCTA193290.10410077001932291No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)