FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18957700
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG13850.085.3033759
TTTGCGC31800.077.761751
CGCCGAA30000.075.823471
TGCGCGA29200.075.387891
GTGCGAC33350.075.0277251
ACGACCG27900.072.325551
GCGCTAG33450.069.758031
CCTTACG36500.067.748591
ATAACGC33100.066.948711
CGTTGCG14950.066.906197
CGGTACG27900.066.8025051
TTACCCG35950.066.539871
CCGCTAT36150.064.953851
GTACCGT43700.064.686198
TTCCGCG16500.064.574617
AACCGCG36300.064.483311
TCCGCGA27700.064.370038
TCGCGAT22650.064.321518
ACGCCGA36800.064.005971
TCGTACG35050.063.8997088
Produced by FastQC (version 0.11.5)