FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23282525
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2233801295.9432535775222No Hit
NGTCCAGA4920492.113383320752367No Hit
GGTCCAGC418460.1797313650473907No Hit
GGGCCAGA395670.1699429078246453No Hit
GGCCCAGA325360.1397442931984396No Hit
GGTCCCGA316550.13596033935322738No Hit
GGTCCAAA261170.11217425944995227No Hit
GNTCCAGA233660.10035853070060057No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)