FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21493545
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2066743996.15649256555864No Hit
NGTCGGAT3220431.498324264331454No Hit
TGTCGGCT670810.312098353249778No Hit
TGTCGGGT568860.2646655077140602No Hit
TGGCGGAT446690.20782518658508867No Hit
TGCCGGAT431140.20059045634398606No Hit
TGTCGGTT340850.1585824953491851No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)