FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23163066
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2234378596.46298551323042No Hit
NGTCCAGA4185141.8068160752121503No Hit
GGTCCAGC420340.18146993148489063No Hit
GGTCCCGA324120.13992966216130456No Hit
GGCCCAGA296570.12803572722194895No Hit
GGGCCAGA288180.12441358151809437No Hit
GNTCCAGA259770.11214836585104926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)