FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17937837
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1721648395.97858983778255No Hit
NATGCTTA3393801.8919783918205968No Hit
CATGCTAA400200.22310382238393628No Hit
CAGGCTTA274350.15294486174670893No Hit
CATGCTTC266620.14863553504249147No Hit
CCTGCTTA241380.13456471925795735No Hit
CATGCTTT215150.1199419974660267No Hit
CATGCTTG210100.11712671934748878No Hit
CACGCTTA205510.11456788240410481No Hit
CNTGCTTA200550.11180277755896656No Hit
CGTGCTTA196170.10936101158684852No Hit
CATGCGTA190570.10623911901975695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)