FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19963133
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTACG31900.077.298731
TGCGCGA29500.077.119361
CGCCGAA31550.076.295381
TTTGCGC34550.075.405681
ACGACCG27850.075.364111
GTGCGAC34200.071.456531
GCGCTAG35950.069.815351
ATAACGC36300.066.9183351
TTACGCG11550.065.892879
ACGCCGA36950.065.741151
CGAACGC35100.065.651751
CCGCTAT40950.064.875161
GGCGACT41800.064.433771
CGTTGCG13650.064.251587
GACGCGT31450.064.1705551
GCGCGTA31000.062.4979821
TCGTACG37900.062.3461278
CGAACTA43450.061.9869161
AACCGCG38250.061.97191
GTACCGT46500.061.414998
Produced by FastQC (version 0.11.5)