FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19777961
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1898096195.97026205077461No Hit
NACATCCT3084141.5593821830268548No Hit
CACATCCA668170.3378356343204439No Hit
CCCATCCT390910.1976492925635762No Hit
CACAGCCT350690.17731352589885277No Hit
CGCATCCT299050.15120365542231579No Hit
CACATGCT269300.1361616599405773No Hit
CACATCCC213160.10777652964327313No Hit
AACATCCT205670.10398948607492955No Hit
CACCTCCT202470.10237152353571735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)