FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18880574
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1801858495.43451380238757No Hit
NGGATCTA3983692.1099411490349818No Hit
AGGCTCTA390530.2068422284195385No Hit
AGGTTCTA324930.1720975220350822No Hit
CGGATCTA307980.16312004073604966No Hit
AGGGTCTA297160.15738928276227196No Hit
AGGATCAA294800.15613932076429457No Hit
AGGATCTC285910.15143077747530345No Hit
AGGAGCTA284580.1507263497391552No Hit
AGGATGTA272770.14447124330012423No Hit
AGGATCGA229320.12145817176956591No Hit
AGGATCTT196200.10391633220473065No Hit
ANGATCTA191180.10125751473445671No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)