FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19777128
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1906742496.4114910921343No Hit
NACTTGAC2955131.4942159448025012No Hit
CACTTGAC435750.22033027242378167No Hit
AACTTGCC402400.20346735886019449No Hit
AACTTGGC307900.155684890141784No Hit
TACTTGAC276290.13970178076412307No Hit
GACTTGAC249230.12601930876920048No Hit
AGCTTGAC225130.11383351515953176No Hit
ACCTTGAC220700.11159355392754702No Hit
AACTTGTC211890.10713891319305816No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)