FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22879297
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2184908095.4971649697104No Hit
NTGAGCCT4753432.0776119126387496No Hit
TTGCGCCT426660.1864830025153308No Hit
TNGAGCCT372680.1628896202536293No Hit
TTGGGCCT372070.16262300367008653No Hit
TTGAGCCC312660.1366562967384881No Hit
TTGAGCCG297810.13016571269650462No Hit
TTGAGCCA283800.12404227280235053No Hit
TTGTGCCT278120.12155967904083766No Hit
TTGAGGCT268570.11738559974111093No Hit
GTGAGCCT264630.11566351885724462No Hit
TTGAGCGT260950.11405507782865881No Hit
TTTAGCCT260930.11404633630132954No Hit
CTGAGCCT246570.10776991967891322No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)