FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20009161
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1910448495.47868598788325No Hit
NACATCCT4029172.0136626418269112No Hit
CACATCCA630340.3150257024769804No Hit
CCCATCCT367580.18370585353378885No Hit
CAGATCCT308840.1543493003029962No Hit
AACATCCT287890.14387909617999475No Hit
CACCTCCT256740.1283112270424532No Hit
CACAGCCT253850.12686688862166687No Hit
CGCATCCT226640.11326811753876137No Hit
CACGTCCT210200.1050518809859144No Hit
CACATGCT201230.10056893439959827No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)