FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19475260
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1874419196.24616564810945No Hit
NACTTGAC3074091.578459029558527No Hit
CACTTGAC413690.2124182167529471No Hit
AACTTGCC389980.20024379648846793No Hit
AGCTTGAC314060.16126100498786666No Hit
TACTTGAC263940.13552579015633168No Hit
AACTTGGC263410.1352536500154555No Hit
ACCTTGAC237510.12195472614999747No Hit
GACTTGAC235770.12106128493278139No Hit
AACTTGAA212660.10919494784665262No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)