FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18915236
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1815983396.00637813876602No Hit
NGCAATTC2946761.5578764124328135No Hit
AGCACTTC487140.2575384203506633No Hit
AGCAATTA417990.22098058940422416No Hit
AGCAGTTC360460.1905659543449524No Hit
AGCATTTC282120.14914960616933354No Hit
CGCAATTC256260.1354780876114895No Hit
AGCAATTT250510.13243821012859686No Hit
AGCAAGTC239820.12678668138214083No Hit
AGCAATGC223960.11840190627280568No Hit
AGCAATCC218760.11565279967958104No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)