FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19196208
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1845276696.12714136041868No Hit
NGCAATTC2860061.4899088403292984No Hit
AGCACTTC510050.2657035181114937No Hit
AGCAATTA378730.19729417393268503No Hit
AGCAGTTC365710.19051158437124666No Hit
AGCATTTC287210.1496180912396865No Hit
CGCAATTC279240.14546622958034214No Hit
AGCAATGC267690.1394494162597113No Hit
AGCAAGTC237290.12361295522532367No Hit
AGCAATCC231540.12061757197046416No Hit
AGCAATTT212060.11046973443921843No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)