FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16895356
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1618330495.78551644605771No Hit
NTCGCTGA3591752.1258800347267024No Hit
TTCGCTAA405900.24024353200962442No Hit
TTCGCTGC389510.23054264142170194No Hit
TTCGCTGG252740.14959140251321132No Hit
TTCGCTGT241240.14278479837891547No Hit
TTCGCTTA218230.12916567132412007No Hit
TTTGCTGA207100.12257806227936245No Hit
TTGGCTGA196840.11650538763432981No Hit
TNCGCTGA178720.10578054703316106No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)