FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18803219
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG11950.087.3528449
TTTGCGC32150.079.752771
CGCCGAA28150.078.035841
TGCGCGA27700.075.325131
GTGCGAC33750.074.012741
ACGACCG27850.072.809021
GGCGACT36850.071.175751
GCGCTAG33050.071.134421
AACCGCG35850.067.627931
GTACCGT41600.066.5668
TTACCCG35300.066.184111
ATAACGC32850.065.7526551
CGGTACG28000.065.59691
CCTTACG37100.064.161191
TCCGCGA29500.063.890138
CGAACGC36500.063.4043431
TCACGCG26300.063.394938
CCGCTAT33550.063.2858541
TCGTACG33600.062.9978948
CCGAACG19450.062.9867979
Produced by FastQC (version 0.11.5)