FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23256225
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2247199696.6278749023111No Hit
NGTCCAGA3988621.7150762860266444No Hit
GGTCCAGC438150.18840117000932008No Hit
GGTCCCGA329320.14160509712990824No Hit
GGCCCAGA288650.12411730622661245No Hit
GGGCCAGA276350.11882839970803517No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)