FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21559870
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2078022996.38383255557663No Hit
NGTCGGAT3697351.7149222142805127No Hit
TGTCGGCT595760.2763281967841179No Hit
TGTCGGGT432530.20061809278070789No Hit
TGCCGGAT383500.17787676827364915No Hit
TGGCGGAT338030.1567866596598217No Hit
TGTCGGTT272920.12658703415187567No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)