FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16971925
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1620644095.48969842843402No Hit
NTCGCTGA3532572.081419756450727No Hit
TTCGCTGC404610.23839959226781876No Hit
TTCGCTAA357470.21062431044209778No Hit
TTCGCTGG310600.18300811487206078No Hit
TTCGCTGT268740.1583438531574939No Hit
TNCGCTGA259980.15318238797307906No Hit
GTCGCTGA194090.11435944950263449No Hit
TTTGCTGA193630.11408841365961728No Hit
TTCGCGGA192240.11326941404702177No Hit
TTCGCTTA187180.11028801977383236No Hit
TTGGCTGA176930.1042486341413835No Hit
CTCGCTGA175080.10315859868577078No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)