FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22827095
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2196790296.236082602714No Hit
NGTCCAGA3580811.5686665342217219No Hit
GGTCCAGC487310.2134787628473969No Hit
GGGCCAGA401920.17607146244408234No Hit
GGTCCCGA393200.17225144066732978No Hit
GGCCCAGA337450.14782870969783934No Hit
GGTCCAGG287750.12605633787391696No Hit
GGTCGAGA252050.11041702853560648No Hit
GGTCCAGT251980.11038636322317841No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)