FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18872741
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG13150.093.159969
TTTGCGC31650.082.209381
TGCGCGA28250.081.696421
GCGCTAG32250.078.1729051
ACGACCG25950.076.474781
GTGCGAC32750.075.408421
CGCCGAA28700.073.244671
CGGTACG31150.068.899591
GGCGACT34650.068.5158541
GACGCGT31750.068.060551
ATAACGC34500.067.961571
GTTACGC31900.066.580238
TTACCCG36750.064.800671
GCGCGTA29700.063.849141
TAGGCGC35150.063.5682221
GTACCGT42900.063.532938
TACGAAC41550.063.5060731
CCGCTAT37700.063.3627241
CGATCGG34650.062.1521531
CGCGGTA37950.061.783251
Produced by FastQC (version 0.11.5)