FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22772780
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2181200095.78101575653038No Hit
NTGAGCCT4845542.1277771093384295No Hit
TTGCGCCT408370.17932373649593947No Hit
TTGAGCGT346870.15231781100067712No Hit
TTTAGCCT294800.12945279408135502No Hit
TTGGGCCT272560.11968674882908453No Hit
TTGAGCCC264180.1160069170298927No Hit
TNGAGCCT263690.11579174786741013No Hit
TTGTGCCT234880.10314067935491406No Hit
TTGAGCTT228370.10028200333907411No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)