FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18841528
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG12300.083.098929
TGCGCGA28500.078.333321
GTGCGAC34350.078.034021
TTTGCGC33200.072.77391
GCGCTAG33150.072.219071
CGCCGAA28850.069.746531
ACGACCG28150.069.393871
TTACCCG36250.069.081891
GACGCGT30400.068.122931
GGCGACT36450.068.098421
TCGTACG36600.067.340958
GCGCGTA33150.066.0162051
CGGTACG29100.063.8477131
CGAACGC37500.063.8416631
ACGCCGA36150.062.5691451
CCGCTAT35850.062.47821
ATAACGC37300.062.412021
GTTACGC31450.062.2335438
GTACCGT39200.061.579998
GCCGGAT37850.061.505111
Produced by FastQC (version 0.11.5)