FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18002537
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1732457196.23405301152832No Hit
NATGCTTA2683441.4905899096332922No Hit
CATGCTAA456430.25353648766282216No Hit
CATGCGTA278470.15468375373982013No Hit
CCTGCTTA250540.13916927375291605No Hit
CAGGCTTA237850.1321202672712185No Hit
CATGCTTC220320.12238275083117452No Hit
CATGCTGA217650.120899626535971No Hit
CACGCTTA199010.11054553033275254No Hit
CATGCCTA198040.11000671738655501No Hit
CGTGCTTA182300.10126350524928791No Hit
CATGGTTA181690.10092466411817402No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)