FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22551250
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2165386296.02067291170113No Hit
NTGAGCCT4264711.8911191175655453No Hit
TTGCGCCT392360.1739859209578183No Hit
TTGAGCCC356740.15819078765035197No Hit
TTGAGCCG323930.1436417050052658No Hit
TTGAGCCA323640.14351310902943296No Hit
TTGGGCCT283820.1258555512443878No Hit
TTTAGCCT277770.12317277312787539No Hit
TNGAGCCT277180.12291114683221552No Hit
TTGTGCCT231590.10269497256249653No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)