FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17745781
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1704867896.07172544279679No Hit
NATGCTTA2772801.562512238824541No Hit
CATGCTAA432430.243680455653093No Hit
CGTGCTTA280770.15821788852234792No Hit
CATGCGTA276680.15591311534837493No Hit
CCTGCTTA271600.15305046309317127No Hit
CAGGCTTA248000.13975152741939056No Hit
CATGCTTC246540.13892879665313124No Hit
CATGCCTA200570.1130240478004321No Hit
CATGCTTT199300.11230838473663121No Hit
CACGCTTA195670.11026282810545221No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)