FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19754419
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1904638796.41582979484235No Hit
NACTTGAC3580591.812551409383389No Hit
CACTTGAC405510.20527558922385925No Hit
AACTTGCC338370.17128825707301237No Hit
AGCTTGAC254370.1287661256957241No Hit
ANCTTGAC240810.12190183877339039No Hit
TACTTGAC234900.11891010310148833No Hit
ACCTTGAC223390.11308355867110037No Hit
AACTTGGC198680.1005749650242814No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)