FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21439688
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2047139895.48365629201321No Hit
NGTCGGAT4338632.023644187359443No Hit
TGGCGGAT610000.28451906576252417No Hit
TGTCGGCT580990.2709880852743753No Hit
TGCCGGAT505950.23598757593860506No Hit
TGTCGGGT451580.2106280651099027No Hit
TGACGGAT327760.15287535900709No Hit
TGTCGGTT278480.12988994989106184No Hit
TGTTGGAT232970.10866296188638566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)