FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20151052
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1926029595.57960050919426No Hit
NACATCCT4242872.105532753327221No Hit
CACATCCA636060.31564605163045584No Hit
CCCATCCT371150.18418393243191472No Hit
CACATCGT281390.13964035227540478No Hit
CACAGCCT241370.11978034695161324No Hit
CNCATCCT237690.11795413956551748No Hit
CACCTCCT212100.10525505070405257No Hit
CGCATCCT210500.10446104749270659No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)