FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20681517
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1992003496.31805055692965No Hit
NATAGCGA3725101.8011734825835068No Hit
CATAGCGC459520.22218873015939786No Hit
CATAGCGT325860.1575609758220347No Hit
CATAGCGG272520.13176983100417633No Hit
CATCGCGA245550.11872920153777888No Hit
CNTAGCGA237690.11492870663211022No Hit
CATAGCAA223640.10813520110734623No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)