FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17936769
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1714814895.60332744431285No Hit
NATGCTTA3625332.021172263521931No Hit
CATGCTAA400140.22308365570187141No Hit
CAGGCTTA371710.20723353241601092No Hit
CCTGCTTA259160.14448533066351024No Hit
CACGCTTA252380.14070538568010774No Hit
AATGCTTA234230.13058650641037972No Hit
CGTGCTTA207140.11548345189705013No Hit
CAAGCTTA204930.11425134593638353No Hit
CATGCTTC203200.1132868467002056No Hit
CATGCGTA191240.1066189791483628No Hit
TATGCTTA183820.10248222519897536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)