FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18872741
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1814574396.14789393867059No Hit
NGGATCTA3241051.7173181150528163No Hit
AGGCTCTA410230.21736641222385236No Hit
AGGTTCTA326230.17285777407743794No Hit
AGGGTCTA305000.16160874565067151No Hit
AGGATCTC301290.15964294746587154No Hit
CGGATCTA291460.15443437707326138No Hit
AGGAGCTA277690.14713813960568844No Hit
AGGATGTA270350.14324893241527556No Hit
AGGATCAA192780.10214732454602116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)