FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21389999
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG13100.090.192929
TGCGCGA33300.082.713371
CGCCGAA32400.076.7619251
TTTGCGC35000.075.089851
GCGCTAG37750.071.586391
CGGTACG32500.070.586421
GTGCGAC32700.069.700621
GGCGACT40950.068.71181
ACGACCG32350.068.618771
GCGCGTA34550.067.902391
ATAACGC38050.067.1196751
AACCGCG39200.066.097561
TCCGCGA30850.065.554898
CGAACGC38900.065.080491
GTTACGC32500.064.9031458
TTACCCG37650.064.480561
TCGACGG37100.063.4353561
CCGATAA43900.063.4180341
CCGCTAT41850.062.976561
TCACGCG29250.062.9453968
Produced by FastQC (version 0.11.5)