FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18841528
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1807646495.93948006764631No Hit
NGGATCTA2797531.484768114348263No Hit
AGGCTCTA403540.21417583542056676No Hit
AGGATGTA375570.19933096721242563No Hit
AGGAGCTA372540.19772281738508682No Hit
CGGATCTA350200.1858660295491958No Hit
AGGTTCTA336900.17880715406945763No Hit
AGGGTCTA322650.17124407319830962No Hit
AGGATCTC295620.15689810295640566No Hit
AGGATCAA243550.12926234008197213No Hit
GGGATCTA202130.10727898501650185No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)