FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19600726
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1881347295.98354673189147No Hit
NACATCCT3560471.816499041923243No Hit
CACATCCA611530.3119935455452007No Hit
CCCATCCT409250.20879328653438653No Hit
CNCATCCT349500.1783097217929581No Hit
CACAGCCT247660.1263524626587811No Hit
CACCTCCT239150.12201078674330737No Hit
CGCATCCT209740.10700624048313313No Hit
CACATCCC202640.1033839256770387No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)