FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15909201
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1517640695.39389187426823No Hit
NTCGCTGA3081501.9369294535910384No Hit
TTCGCTGC481870.3028876183033956No Hit
TTCGCTAA350410.2202561901128787No Hit
TTCGCTGT301730.18965754471264773No Hit
TTCGCTGG265180.16668341797931902No Hit
TTCTCTGA249280.15668920142501186No Hit
TTTGCTGA248510.15620520477426866No Hit
TTCGCTTA241720.1519372343086243No Hit
GTCGCTGA231610.14558242114107428No Hit
TTGGCTGA200690.12614712706188072No Hit
TGCGCTGA188870.11871746418943352No Hit
TTCGCGGA165830.10423527869187145No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)