FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16495719
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1586832796.19663744272074No Hit
NTCGCTGA3023521.832911920965676No Hit
TTCGCTGC421740.25566633379242215No Hit
TTCGCTAA304990.18489039489579084No Hit
TNCGCTGA290510.17611235981893242No Hit
TTCGCTGG233890.14178830277116142No Hit
TTCGCTGT230030.13944830170785522No Hit
GTCGCTGA202570.12280155839221073No Hit
TTCGCTTA166880.10116564182500927No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)