FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18383029
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1771696896.37676141401941No Hit
NACTTGAC3124881.6998722027800748No Hit
AACTTGCC403450.21946872846689194No Hit
CACTTGAC391560.2130008063415447No Hit
TACTTGAC259870.14136408096837577No Hit
ACCTTGAC248570.13521710703932416No Hit
AGCTTGAC238550.12976642750223588No Hit
AACTTGGC217790.11847340283257998No Hit
GACTTGAC200190.10889935494308364No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)