FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20234620
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1945529896.14857111228183No Hit
NATAGCGA3919411.9369822610950933No Hit
CATAGCGC517630.25581404543302516No Hit
CATAGCGT294120.14535484234445717No Hit
CNTAGCGA251660.12437100375495068No Hit
CATAGCGG238920.11807486377307802No Hit
CATCGCGA238240.11773880606603929No Hit
CATAGCAA225540.1114624341845807No Hit
CCTAGCGA215270.10638697440327517No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)