FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17598553
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1691449496.11298156160906No Hit
NATGCTTA3423721.94545540192992No Hit
CATGCTAA395420.22468892754989572No Hit
CCTGCTTA263890.14994982826144854No Hit
CATGCTTC238060.13527248518670826No Hit
CNTGCTTA229600.13046527177546927No Hit
CATGCGTA179560.10203111585367275No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)